Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs12601994 chr17:27447905 C/T 0.000165 175 14.35 19.53 7.33 KM Plot
PAAD rs12602480 chr17:39098378 A/G 2.48E-5 173 15.33 16.6 5.97 KM Plot
PAAD rs12612476 chr2:70506745 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12614299 chr2:70499593 T/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs12615862 chr2:70485742 C/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12615873 chr2:70485581 G/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs12615979 chr2:70485881 G/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs12616085 chr2:70415510 C/T 0 177 15.3 18.43 1.03 KM Plot
PAAD rs12621275 chr2:70521515 G/A 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12621319 chr2:70521830 C/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12621496 chr2:70481418 G/A 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12623300 chr2:70494033 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12623318 chr2:70493904 G/A 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12623397 chr2:70446325 A/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs12624244 chr2:70417138 A/G 0 177 15.3 18.43 1.03 KM Plot